학술논문

1. ARTICLE

The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger

저자: by Kun, Roland S. ^a; Garrigues, Sandra ^{a, 1}; Peng, Mao ^a; Keymanesh, Keykhosrow ^b; Lipzen, Anna ^b; Ng, Vivian ^b; Tejomurthula, Sravanthi ^b; Grigoriev, Igor V. ^b; de Vries, Ronald P. ^{a, ⁎}
소스: In Fungal Genetics and Biology March 2023 165

2. ARTICLE

Expansion of the global RNA virome reveals diverse clades of bacteriophages

저자: by Narrowe, Adrienne B.; Probst, Alexander J.; Sczyrba, Alexander; Kohler, Annegret; Séguin, Armand; Shade, Ashley; Campbell, Barbara J.; Lindahl, Björn D.; Reese, Brandi Kiel; Roque, Breanna M.; DeRito, Chris; Averill, Colin; Cullen, Daniel; Beck, David A.C.; Walsh, David A.; Ward, David M.; Wu, Dongying; Eloe-Fadrosh, Emiley; Brodie, Eoin L.; Young, Erica B.; Lilleskov, Erik A.; Castillo, Federico J.; Martin, Francis M.; LeCleir, Gary R.; Attwood, Graeme T.; Cadillo-Quiroz, Hinsby; Simon, Holly M.; Hewson, Ian; Grigoriev, Igor V.; Tiedje, James M.; Jansson, Janet K.; Lee, Janey; VanderGheynst, Jean S.; Dangl, Jeff; Bowman, Jeff S.; Blanchard, Jeffrey L.; Bowen, Jennifer L.; Xu, Jiangbing; Banfield, Jillian F.; Deming, Jody W.; Kostka, Joel E.; Gladden, John M.; Rapp, Josephine Z.; Sharpe, Joshua; McMahon, Katherine D.; Treseder, Kathleen K.; Bidle, Kay D.; Wrighton, Kelly C.; Thamatrakoln, Kimberlee; Nusslein, Klaus; Meredith, Laura K.; Ramirez, Lucia; Buee, Marc; Huntemann, Marcel; Kalyuzhnaya, Marina G.; Waldrop, Mark P.; Sullivan, Matthew B.; Schrenk, Matthew O.; Hess, Matthias; Vega, Michael A.; O’Malley, Michelle A.; Medina, Monica; Gilbert, Naomi E.; Delherbe, Nathalie; Mason, Olivia U.; Dijkstra, Paul; Chuckran, Peter F.; Baldrian, Petr; Constant, Philippe; Stepanauskas, Ramunas; Daly, Rebecca A.; Lamendella, Regina; Gruninger, Robert J.; McKay, Robert M.; Hylander, Samuel; Lebeis, Sarah L.; Esser, Sarah P.; Acinas, Silvia G.; Wilhelm, Steven S.; Singer, Steven W.; Tringe, Susannah S.; Woyke, Tanja; Reddy, T.B.K.; Bell, Terrence H.; Mock, Thomas; McAllister, Tim; Thiel, Vera; Denef, Vincent J.; Liu, Wen-Tso; Martens-Habbena, Willm; Allen Liu, Xiao-Jun; Cooper, Zachary S.; Wang, Zhong; Neri, Uri ^{1, 12, ∗}; Wolf, Yuri I. ²; Roux, Simon ³; Camargo, Antonio Pedro ³; Lee, Benjamin ^{2, 4}; Kazlauskas, Darius ⁵; Chen, I. Min ³; Ivanova, Natalia ³; Zeigler Allen, Lisa ^{6, 7}; Paez-Espino, David ³; Bryant, Donald A. ⁸; Bhaya, Devaki ⁹; Krupovic, Mart ¹⁰; Dolja, Valerian V. ^{2, 11, ∗∗}; Kyrpides, Nikos C. ^{3, ∗∗∗}; Koonin, Eugene V. ^{2, ∗∗∗∗}; Gophna, Uri ^{1, ∗∗∗∗∗}
소스: In Cell 13 October 2022 185(21):4023-4037

3. ARTICLE

Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies

저자: by Chang, Ying ^{1, 2, 14, ∗}; Wang, Yan ^{3, 4, 5}; Mondo, Stephen ⁶; Ahrendt, Steven ⁶; Andreopoulos, William ⁶; Barry, Kerrie ⁶; Beard, Jeff ¹; Benny, Gerald L. ⁷; Blankenship, Sabrina ¹; Bonito, Gregory ⁸; Cuomo, Christina ⁹; Desiro, Alessandro ⁸; Gervers, Kyle A. ¹; Hundley, Hope ⁶; Kuo, Alan ⁶; LaButti, Kurt ⁶; Lang, B. Franz ¹⁰; Lipzen, Anna ⁶; O’Donnell, Kerry ¹¹; Pangilinan, Jasmyn ⁶; Reynolds, Nicole ⁷; Sandor, Laura ⁶; Smith, Matthew E. ⁷; Tsang, Adrian ¹²; Grigoriev, Igor V. ^{6, 13}; Stajich, Jason E. ³; Spatafora, Joseph W. ¹
소스: In iScience 19 August 2022 25(8)

4. ARTICLE

Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress

저자: by Calhoun, Sara ^{a, d}; Kamel, Bishoy ^a; Bell, Tisza A.S. ^c; Kruse, Colin P.S. ^b; Riley, Robert ^a; Singan, Vasanth ^a; Kunde, Yuliya ^b; Gleasner, Cheryl D. ^b; Chovatia, Mansi ^a; Sandor, Laura ^a; Daum, Christopher ^a; Treen, Daniel ^a; Bowen, Benjamin P. ^{a, d}; Louie, Katherine B. ^{a, d}; Northen, Trent R. ^{a, d}; Starkenburg, Shawn R. ^b; Grigoriev, Igor V. ^{a, d, e, ⁎}
소스: In Algal Research July 2022 66

5. ARTICLE

Annotation survey and life cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit

저자: by Louet, Clémentine ^a; Blot, Carla ^a; Shelest, Ekaterina ^b; Guerillot, Pamela ^a; Salamov, Asaf ^c; Zannini, Flavien ^a; Pétrowski, Jérémy ^a; Grigoriev, Igor V. ^{c, d}; Frey, Pascal ^a; Duplessis, Sebastien ^{a, ⁎}
소스: In Fungal Genetics and Biology July 2022 161

6. ARTICLE

Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes

저자: by Zhang, Jingcheng ^{a, 1}; Shen, Nan ^{a, 1}; Li, Chuang ^a; Xiang, Xingjie ^a; Liu, Gaolei ^a; Gui, Ying ^a; Patev, Sean ^b; Hibbett, David S. ^b; Barry, Kerrie ^c; Andreopoulos, William ^c; Lipzen, Anna ^c; Riley, Robert ^c; He, Guifen ^c; Yan, Mi ^c; Grigoriev, Igor V. ^{c, d}; Shan Kwan, Hoi ^e; Kit Cheung, Man ^e; Bian, Yinbing ^a; Xiao, Yang ^{a, ⁎}
소스: In Journal of Advanced Research May 2022 38:91-106

7. ARTICLE

Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus Aspergillus niger

저자: by Garrigues, Sandra ^{1, 3, 4}; Kun, Roland S. ^{1, 3}; Peng, Mao ¹; Bauer, Diane ²; Keymanesh, Keykhosrow ²; Lipzen, Anna ²; Ng, Vivian ²; Grigoriev, Igor V. ²; de Vries, Ronald P. ^{1, 5, ∗}
소스: In iScience 15 April 2022 25(4)

8. ARTICLE

CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner

저자: by Peng, Mao ^{a, 1}; Khosravi, Claire ^{a, 1}; Lubbers, Ronnie J.M. ^a; Kun, Roland S. ^a; Aguilar Pontes, Maria Victoria ^a; Battaglia, Evy ^a; Chen, Cindy ^b; Dalhuijsen, Sacha ^c; Daly, Paul ^a; Lipzen, Anna ^b; Ng, Vivian ^b; Yan, Juying ^b; Wang, Mei ^b; Visser, Jaap ^a; Grigoriev, Igor V. ^{b, d}; Mäkelä, Miia R. ^e; de Vries, Ronald P. ^{a, ⁎}
소스: In The Cell Surface December 2021 7

9. ARTICLE

A single-cell genomics pipeline for environmental microbial eukaryotes

저자: by Ciobanu, Doina ^{1, 8, 11, ∗}; Clum, Alicia ^{1, 8}; Ahrendt, Steven ^{1, 2, 8}; Andreopoulos, William B. ^{1, 8}; Salamov, Asaf ^{1, 8}; Chan, Sandy ^{1, 3}; Quandt, C. Alisha ^{4, 10}; Foster, Brian ¹; Meier-Kolthoff, Jan P. ⁵; Tang, Yung Tsu ⁶; Schwientek, Patrick ^{1, 9}; Benny, Gerald L. ⁷; Smith, Matthew E. ⁷; Bauer, Diane ¹; Deshpande, Shweta ¹; Barry, Kerrie ¹; Copeland, Alex ¹; Singer, Steven W. ⁶; Woyke, Tanja ¹; Grigoriev, Igor V. ^{1, 2, 8}; James, Timothy Y. ^{4, 8}; Cheng, Jan-Fang ^{1, 8, ∗∗}
소스: In iScience 23 April 2021 24(4)

10. ARTICLE

Genomic adaptations of the green alga Dunaliella salina to life under high salinity

저자: by Polle, Jürgen E.W. ^{a, b, c, ⁎}; Calhoun, Sara ^c; McKie-Krisberg, Zaid ^{a, d}; Prochnik, Simon ^{c, e}; Neofotis, Peter ^f; Yim, Won C. ^g; Hathwaik, Leyla T. ^g; Jenkins, Jerry ^{c, h}; Molina, Henrik ⁱ; Bunkenborg, Jakob ^j; Grigoriev, Igor V. ^{c, k}; Barry, Kerrie ^c; Schmutz, Jeremy ^{c, h}; Jin, EonSeon ^l; Cushman, John C. ^g; Magnusson, Jon K. ^m
소스: In Algal Research September 2020 50

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