Open-source electronic design automation (EDA) shows promising potential in unleashing EDA innovation and lowering the cost of chip design. The open-source EDA toolchain is a comprehensive set of software tools designed to facilitate the design, analysis, and verification of electronic circuits and systems. We developed a physical design EDA toolchain (named iPD) from netlist to GDS-II, including design, analysis, and verification. iPD now covers the whole flow of physical design (including floorplan, placement, clock tree synthesis, routing, timing optimization etc.), part of the analysis tools (timing analysis and power analysis), and part of the verification tools (design rule check). For more friendly support EDA research and development and chip design, we design a reliability, extendibility, ease-of-use, and feature richness physical design toolchain. This paper introduces the software structure, functions, and metrics of the iPD toolchain.