Rational nitrogen (N) application can greatly increase rice (Oryza sativa L.) yield. However, excessive N input can lead not only to low N use efficiency (NUE) but also to severe environmental pollution. Reducing N application rate with a higher planting density (RNHD) is recommended to maintain rice yield and improve NUE. The effects of RNHD on fertilizer N fate and rice root growth traits remain unclear. We accordingly conducted a two-year field experiment to investigate the influence of RNHD on rice yield, fertilizer 15N fate, and root growth in a double-rice cropping system in China. In comparison with the conventional practice of high N application with sparse planting, RNHD resulted in similar yield and biomass production as well as plant N uptake. RNHD increased agronomic NUEs by 23.3%–31.9% (P