In this work, we introduce position-resolved surface characterization and nanofabrication us-ing an optical microscope (OM) combined with a nanopipette-based quartz tuning fork atomic force micro-scope (nanopipette/QTF-AFM) system. This system is used to accurately determine substrate position and nanoscale phenomena under ambient conditions. Solutions consisting of 5 nm Au nanoparticles, nanowires, and polydimethylsiloxane (PDMS) are deposited onto the substrate through the nano/microaperture of a pulled pipette. Nano/microscale patterning is performed using a nanopipette/QTF-AFM, while position is resolved by monitoring the substrate with a custom OM. With this tool, one can perform surface characterization (force spectroscopy/microscopy) using the quartz tuning fork (QTF) sensor. Nanofabrication is achieved by accu-rately positioning target materials on the surface, and on-demand delivery and patterning of various solutions for molecular architecture.