BIOLOGICAL DATABASE INDEX AND QUERY SEARCHING
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Methods and system for biological database indexing and query searching are described. In one embodiment, one or more words may be extracted from a biological sequence using a spacer. The spacer may be one or more characters within the biological sequence. The word and a position of the word within the biological sequence may be stored in a sequence index associated with the spacer. The sequence index may be capable of being used for an operation associated with the biological sequence.