ABSTRACT: Between January 1993 and January 1995, the number of Great Cormorants (Phalacrocorax carbo) using Lake Naivasha, Kenya (00° 45′ S, 36° 20′ E) for foraging and resting increased 56%, while the number of sympatric Long-tailed Cormorants (Phalacrocorax africanus) decreased 64%. In 1995 and 1996, we documented habitat changes and conducted monthly population and resource-use surveys of the two species in an attempt to discover the most likely reasons for these changes. The increase in Great Cormorants was probably the result of immigration from nearby Lake Nakuru due to extreme water level reductions there. Lake Naivasha also experienced falling water levels and transparency during this period, but these changes were not as severe and are not considered likely reasons for the decline in Long-tailed Cormorant numbers. Despite some probable dietary overlap, the two species were well separated in terms of foraging locations, foraging methods, resting habitats and breeding timing. The decline in Long-tailed Cormorant numbers may be connected with increased disturbance by fishermen along the lake littoral, this speciesʼ primary feeding location.