We present the first application of a new foreground removal pipeline to the current leading HI intensity mapping dataset, obtained by the Green Bank Telescope (GBT). We study the 15hr and 1hr field data of the GBT observations previously presented in Masui et al (2013) and Switzer et al (2013), covering about 41 square degrees at 0.6Comment: 14 pages, 11 figures, published in Monthly Notices of the Royal Astronomical Society 2016