Additional file 5 of Genetic diversity and signatures of selection in BoHuai goat revealed by whole-genome sequencing
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- Yao, Zhi; Zhang, Shunjin; Wang, Xianwei; Guo, Yingwei; Xin, Xiaoling; Zhang, Zijing; Xu, Zejun; Wang, Eryao; Jiang, Yu; Huang, Yongzhen
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Additional file 5: Table S1. Summary of sequencing data. Table S2. List of additional goat samples for analysis of genetic background. Table S3. Distribution of SNPs identified in goat breeds within various genomic regions annotated by ANNOVAR. Only the breeds with a sample size no less than 5 were calculated in the table. Table S4. CV error corresponding to different K values. Table S5. GO enrichment results for the genes containing specific nsSNPs > 5 in Boer goat. Table S6. GO enrichment results for the genes containing specific nsSNPs > 5 in Huai goat. Table S7. A summary of genes from θπ in BoHuai goat. Table S8. A summary of genes from CLR in BoHuai goat. Table S9. KEGG pathway analysis of BoHuai goat candidate genes overlapped by θπ and CLR methods. Table S10. GO enrichment of BoHuai goat candidate genes overlapped by θπ and CLR methods. Table S11. A summary of genes from Fst between Boer and Huai goat. Table S12. Summary of genes screened by XP-EHH method between Boer and Huai goat. Table S13. KEGG pathway analysis of candidate genes overlapped by Fst and XP-EHH methods. Table S14. Go enrich analysis of candidate genes overlapped by Fst and XP-EHH methods.