Additional file 3 of The ‘Tommy Atkins’ mango genome reveals candidate genes for fruit quality
- Resource Type
- Authors
- Bally, Ian S. E.; Bombarely, Aureliano; Chambers, Alan H.; Cohen, Yuval; Dillon, Natalie L.; Innes, David J.; Islas-Osuna, María A.; Kuhn, David N.; Mueller, Lukas A.; Ophir, Ron; Rambani, Aditi; Sherman, Amir; Haidong Yan
- Source
- Subject
- food and beverages
- Language
Additional file 3: Supplemental Data S3. Fruit weight LG4 QTL report. Supplemental Data S4. Fruit weight LG7 QTL report. Supplemental Table 1. Summary of the M. indica genome assembly by chromosome. Supplemental Table 2. BUSCO analysis for the consensus diploid genome assembly TA4. Supplemental Table 3. Occurrence and distribution of repetitive DNA sequences in the mango genome. Supplemental Table 4. Protein domain content. Supplemental Table 5. Number of homologs pairs with Ks between 0.1 and 0.6 per chromosome. Supplemental Table 6. Repetitive elements comparative analysis. Supplemental Table 7. Comparison of the SNP variants and variants rate for ‘Tommy Atkins’ and ‘Kensington Pride’ by pseudomolecule. Supplemental Table S8. Concurrence of linkage groups between ‘Tommy Atkins’ and ‘Alphonso’. Supplementary Figure 1. Repeat composition for M. indica, P. vera and C. sinensis