To quantitatively provide reliable predictions for the hot and dense QCD matter, a holographic model should be adjusted to describe first-principles lattice results available at vanishing baryon chemical potential. The equation of state from two well-known lattice groups, the HotQCD collaboration and the Wuppertal-Budapest (WB) collaboration, shows visible differences at high temperatures. We revisit the Einstein-Maxwell-dilaton (EMD) holographic model for hot QCD with 2+1 flavors and physical quark masses by fitting lattice QCD data from the WB collaboration. Using the parameterization for the scalar potential and gauge coupling proposed in our work [Phys.Rev.D 106 (2022) 12, L121902], the equation of state, the higher order baryon number susceptibilities, and the chiral condensates are in quantitative agreement with state-of-the-art lattice results. We find that the critical endpoint (CEP) obtained from fitting the WB collaboration data is nearly identical to the one from the HotQCD collaboration, suggesting the robustness of the location of the CEP. Moreover, our holographic prediction for the CEP location is in accord with more recent Bayesian analysis on a large number of holographic EMD models and an effective potential approach of QCD from gap equations.