Additional file 8 of Exposing new taxonomic variation with inflammation — a murine model-specific genome database for gut microbiome researchers
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- Leleiwi, Ikaia; Rodriguez-Ramos, Josué; Shaffer, Michael; Sabag-Daigle, Anice; Kokkinias, Katherine; Flynn, Rory M.; Daly, Rebecca A.; Kop, Linnea F. M.; Solden, Lindsey M.; Ahmer, Brian M. M.; Borton, Mikayla A.; Wrighton, Kelly C.
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Additional file 8: Fig. S1. Relative abundance of classes in pre-infection communities are not statistically different than uninfected communities, indicating a shared starting microbiome prior to infection. Fig. S2. CBAJ-DB uninfected (no Salmonella) amplicon sequenced communities show considerable taxonomic overlap with communities from other CBA studies. Fig. S3. A) Gigabase pairs (Gbps) per sample of prevalent murine genome databases. Fig. S4. Contamination and completion statistics and the most resolved taxonomy groups for MAGs containing amplicon sequencing variants (ASVs). Fig. S5. Procrustes analysis of dereplicated medium and high quality (dMQHQ) metagenome assembled genomes (MAGs) and viral metagenome assembled genomes (vMAGs).